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Research projects
Academic year 2024/25
Bioinformatics retraining program
Biostatistics retraining program
Bioinformatics retraining program
Biostatistics retraining program
Impact of hemoperfusion on outcomes and clinical dynamics in treatment of bacterial sepsis
students:
N. Gladyshev, A. Potamoshneva, O. Tarasov, V. Uvarova
supervisors:
E. Bakin, A. Popov
Github
Slides
Forecasting the workload of stroke centers and achieving key quality indicators of stroke care in St. Petersburg based on historical data
students:
A. Kravets, A. Andreychenko, V. Zaitceva
supervisors:
O. Arnaut , T. Kharitonova
Github
Slides
Cognitive impairment in middle-aged men: a 40-year prospective study
students:
M. Imanaliev, K. Lind, A. Rakin, K. Vekhova, I. Zarva
supervisors:
O. Mironenko, P. Chernousov, O. Isaykina, V. Gorbunov
Github
Slides
Evaluation of the predictive ability of immunological status and clustering patterns for chronic graft-versus-host disease following allogeneic hematopoietic stem cell transplantation
students:
D. Belousov, N. Laskina, E. Marochkina, S. Smirnov
supervisors:
E. Bakin, M.Drokov, O. Karavayeva
Github
Slides
Association of solar, geomagnetic, and climatic events with ambulance calls for acute cerebrovascular accidents
students:
E. Berdinskikh, M. Kozyreva, A. Tikhonenko
supervisors:
P. Tolstov, M. G. Slavenko
Github
Slides
Prognosis of patients with chronic thromboembolic pulmonary hypertension
students:
I. Garanina, A. Isaeva, M. Kasyanova, A. Zenkova
supervisors:
M. Kuznetsov, S. Yarovoy
Github
Slides
Identification of predictors of outcome in patients with consequences of severe brain injuries
students:
E. Namiot, E. Iurlova, U. Zolotikov
supervisors:
E. Shelly, A. Popov, V.M. Pisarev
Github
Slides
Obesity in the city: agreement between bioimpedance analysis and ultrasound scanning in body composition assessment
students:
I. Derkachev, N. Zaitsev, V. Saldaeva, A. Bozhko, V. Porolo
supervisors:
E. Bondareva, M. Slavenko
Github
Slides
Evolutionary constraint across the grass family (
Poaceae
)
students:
A. Akinshina, E. Dementeva, K. Vishnyakov
supervisors:
P. Zhurbenko
Github
Slides
Differential microbiome composition in vegetarians and non-vegetarians:
insights into sulfoquinovose degradation pathways
students:
A. Anurov, V. Pyrkin
supervisors:
A. Rybina
Github
Slides
Solving classification tasks on embedded presentation of genomic data
students:
A. Chutko, P. Kozlova
supervisors:
N. Sapozhnikov
Slides
Evolution of CLK paralogues and the role of unproductive splicing event in them
students:
A. Kuznetsova,
supervisors:
D. Skvortsov, D. Pervouchine
Github
Slides
The role of Drosophila chromatin
remodeling factor CHD1 in regulation of
dosage compensation
students:
A. Mikhailova, E. Kulikov
supervisors:
Y. Kuchinskaya, A. Konev
Github
Slides
Tracing rejuvenation trajectories in embryogenesis
and cellular reprogramming with signatures of aging
students:
A. Ponomareva,
Y. Zaitseva, A. Kalinina, E. Kudasheva, E. Tsymbalova
supervisors:
E. Efimov
Github
Slides
Genome-wide mutation patterns in hst3Δ hst4Δ yeast strain: Insights into AID/APOBEC-mediated mutagenesis
students:
A. Shipunova
supervisors:
A. Zhuk, E. Stepchenkova
Github
Slides
The role of secondary DNA structures in the neuron-specific regulation of polycomb repressive complexes
students:
B. Rakhimov
supervisors:
M. Poptsova, E. Khrameeva
Github
Slides
Exploring tissue specific adaptive immunity features via RNA sequencing data
students:
D. Ryazantsev, V. Basova
supervisors:
D. Luppov, E. Vlasova, M. Shugay
Github
Slides
Comparing patterns of genome variation in contemporary and ancient humans
students:
D. Vashunina
supervisors:
Y. Barbitoff
Github
Slides
Investigation of histone tails in the nucleosome core particle by means of MD modeling and NMR spectroscopy
students:
D. Yudin, A. Levkina
supervisors:
O. Lebedenko, N. Skrynnikov
Github
Slides
Studying Gene Regulatory Hierarchy in Crohn’s Disease with a Bayesian Network
students:
E. Kozhevnikova
supervisors:
M.Struchalin
Github
Slides
Diagnostic myeloid signatures in peripheral blood of autoimmune diseases
students:
E. Lebedeva
supervisors:
A. Zaytsev
Github
Slides
gbtools: SNP-based hashing tool
students:
G. Muradova
supervisors:
F. Konovalov
Github
Slides
Transcriptome-based prediction of anti-TNFα treatment outcomes in inflammatory bowel diseases
students:
G. Reshetnikova, E. Scheglova, A. Osipov, A. Lee
supervisors:
M. Saliutina
Github
Slides
Presence-absence variations in
Fusarium oxysporum
and
Linum usitatissimum
students: I. A. Makeeva
supervisors: A. Samsonova, A. Kanapin, V. Stanin
Github
Slides
Polycomb influence on gene expression networks
students:
I. Chicherin, V. Kulenich, A. Nazarova
supervisors:
N. Vaulin
Github
Slides
Getting to know your amphipods: Updates to the speCOIdent app for analysis of DNA barcoding results
students:
K. Pavlenova, V. Afanasyeva
supervisors:
P. Drozdova
Github
Slides
Optimizing T-cell receptor and cognate antigen sequence embedding using artificial neural networks
students:
M. Beliakov, A. Komolov
supervisors:
E. Vlasova, M. Shugay
Github
Slides
A Single-Cell Hi-C Analysis Framework
students:
M. Fink, G. Medvedeva
supervisors:
N. Vaulin
Github
Slides
Invertons as a source of programmed variability in the bacterial immunity systems
students:
P. Kalitina
supervisors:
O. Kotovskaya, A. Isaev
Github
Slides
Single-cell analysis of common and tissue-of-origin specific transcriptional programs in different cancer types
students:
P. Karitskaya, V. Stepanova, I. Patskan
supervisors:
A. Yurchenko
Github
Slides
Understanding the combined positive and negative selection signals in human genome and beyond
students:
P. Malysheva
supervisors:
Y. Barbitoff
Github
Slides
Development of an algorithm to search for eRNAi targets using multi-omics analysis data
students:
V. Ishtuganova, M. Kravchenko
supervisors:
D.Smutin
Github
Slides
Search of novel immunity systems in the metagenomes of microbial communities
students:
V. Subrakova, S. Borovikova
supervisors:
P. Gorshenina, D. Sutormin, O. Kotovskaya, A. Isaev
Github
Slides
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